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View Structure Prediction Details

Protein: gi|10176891, gi|...
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10176891, gi|....

Description E-value Query
Range
Subject
Range
gi|89151095, gi|... - gi|89200934|ref|ZP_01179683.1| Glycolate oxidase subunit GlcD [Bacillus cereus subsp. cytotoxis NVH ...
336.0 [0..61] [527..18]

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Predicted Domain #1
Region A:
Residues: [1-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLEAFALS LFLVFLVKWV NSDSSSSPSK DQFLSCMSTH SDSSFINPKS FIHKPDSRVY  60
   61 TDFSQSLISQ NYRFLTLNFT SQKPILIVTP RTDTEIQRSL LCSRKLGVKV RTKSGGHDYE 120
  121 GLSYLSLHSP FIILDLVNVR SIEINLADET AWVGAGATIG ELYYKIAKSS KIHGFPAGTC 180
  181 PSVGVGGHFS GGGFGAMMRK HGLAADNVVD ARFVDANGRI YNSRREMGED LFWAIRGGGA 240
  241 ASFGVVLSWK VKLVRVPEKV TCFRRNLPLT QNMTKIVHRW QQIAAELDDN LFIRVIVSIS 300
  301 GGSVQTTFQA NYLGGIDKLI PLMNQKFPEL GLTFQDCSEM TWIDSIMYFN WKKGQPLETL 360
  361 LDRGQRYNDL YFKAKSDFVK NPIPEIGLEG IWTRFHEVES PIMIMEPLGG KMYEIGETET 420
  421 PFPHRRGNLY NIQYMVKWRL KDIGVMEKHV TWMRLLYRYM RVYVSASPRG AYLNYRDLDL 480
  481 GMNRGVNTSF EDAKLWGFRY FGSNFKRLAI VKGKIDPTNF FRNEQSVPPL IV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.221849
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle