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View Structure Prediction Details

Protein: AAP7_ARATH
Organism: Arabidopsis thaliana
Length: 467 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAP7_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
228.0 [0..21] [426..970]

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Predicted Domain #1
Region A:
Residues: [1-467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKEDDESR VITPTELQLH DSVTARTGTL WTAVAHIITG VIGAGVLSLA WATAELGWIA  60
   61 GPAALIAFAG VTLLSAFLLS DCYRFPDPNN GPLRLNSYSQ AVKLYLGKKN EIVCGVVVYI 120
  121 SLFGCGIAYT IVIATCSRAI MKSNCYHRNG HNATCSYGDN NNYFMVLFGL TQIFMSQIPN 180
  181 FHNMVWLSLV AAIMSFTYSF IGIGLALGKI IENRKIEGSI RGIPAENRGE KVWIVFQALG 240
  241 NIAFSYPFSI ILLEIQDTLR SPPAEKQTMK KASTVAVFIQ TFFFFCCGCF GYAAFGDSTP 300
  301 GNLLTGFGFY EPFWLVDFAN ACIVLHLVGG YQVYSQPIFA AAERSLTKKY PENKFIARFY 360
  361 GFKLPLLRGE TVRLNPMRMC LRTMYVLITT GVAVMFPYFN EVLGVVGALA FWPLAVYFPV 420
  421 EMCILQKKIR SWTRPWLLLR GFSFVCLLVC LLSLVGSIYG LVGAKFG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.33
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle