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View Structure Prediction Details

Protein: gi|20197186, gi|...
Organism: Arabidopsis thaliana
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197186, gi|....

Description E-value Query
Range
Subject
Range
gi|3128169, gi|7... - pir||T02378 hypothetical protein At2g44220 [imported] - Arabidopsis thaliana, gi|3128169|gb|AAC16073...
577.0 [0..2] [402..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGVAGFAVA LMVTSLLIAT CADGKEFFHH REIKVQRFLK QLNKPALKSI KSEDGDIIDC  60
   61 VLITSQPAFD HPLLKNHTIQ VKPSFIPEGE GDSTYTKKET KATQVWQKYG ECPENTIPIR 120
  121 RTKKEEILRA KSLESFGKKN HQYIPEDTSS PNYHHEYAFM GV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNGKFYGTKA SINVWKPDVA TPSEFSLSQT WIVSGDGTSR NTIEAGWQVY PGMYGNNDPR  60
   61 LFVYWTSDGY QKTGCYNLVC GGFVQTTNQY TVGGSYVTAS QYDGAQLVLN LLIWKDPKTG 120
  121 NWWLKINDND VIGYWPGSLF NSLGDGAIKV EWGGEIFAPT SDRHTTTDMG SGHFAEEGIK 180
  181 KASYVKNIMI VDGTNALREP QGLYSYADNR NCYSVVPGNA GTSFGTHFFY GGPGQNVKCP 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 119.148742
Match: PF03080.6
Description: No description for PF03080.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle