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View Structure Prediction Details

Protein: NFYA1_ARATH
Organism: Arabidopsis thaliana
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYA1_ARATH.

Description E-value Query
Range
Subject
Range
gi|2398521, gi|3... - gi|42573355|ref|NP_974774.1| NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor [Arabidopsi...
382.0 [0..1] [272..1]
gi|50917949, gi|... - gi|50917949|ref|XP_469371.1| putative CCAAT-binding transcription factor [Oryza sativa (japonica cul...
266.0 [0..1] [261..1]
gi|45861221 - gi|45861221|gb|AAS78487.1| CCAAT-box transcription factor complex WHAP13 [Triticum aestivum]
243.0 [0..50] [264..26]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSKPGRENE EEVNNHHAVQ QPMMYAEPWW KNNSFGVVPQ ARPSGIPSNS SSLDCPNGSE  60
   61 SNDVHSASED GALNGENDGT WKDSQAATSS RSVDNHGMEG NDPALSIRNM HDQPLVQPPE 120
  121 LVGHYIACVP NPYQDPYYGG LMGAYGHQQL GFRPYLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRERTALPL DMAQEPVYVN AKQYEGILRR RKARAKAELE RKVIRDRKPY LHESRHKHAM  60
   61 RRARASGGRF AKKSEVEAGE DAGGRDRERG SATNSSGSEQ VETDSNETLN SSGAP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 34.920819
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.355 N/A N/A a.7.5 Tubulin chaperone cofactor A
View Download 0.308 N/A N/A a.2.3 Chaperone J-domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle