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View Structure Prediction Details

Protein: gi|60547937, gi|...
Organism: Arabidopsis thaliana
Length: 570 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60547937, gi|....

Description E-value Query
Range
Subject
Range
gi|194414604, gi... - gi|75211496|ref|ZP_00711586.1| COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and rela...
298.0 [0..108] [564..4]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQPFPGDSS PPNCLHGCFS SSPFHGTTSS EHPPHSTPTV TSATLRRNFA QTTVSTIFPD  60
   61 TEFTDPNSLP SHQESFSDFI QAYPNYSDTY KIDRLRSDHY FHLGLSH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 2jg2A
Description: No description for 2jg2A was found.

Predicted Domain #2
Region A:
Residues: [108-570]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTCLDYIGIG LYSYSQLLNY DPSTYQISSS LSESPFFSVS PKIGNLKEKL LNDGGQETEF  60
   61 EYSMKRRIMG FLKISEEDYS MVFTANRTSA FRLVAESYPF NSKRKLLTVY DYESEAVSEI 120
  121 NRVSEKRGAK VAAAEFSWPR LKLCSSKLRK LVTAGKNGSK TKKKGIYVFP LHSRVTGSRY 180
  181 PYLWMSVAQE NGWHVMIDAC GLGPKDMDSF GLSIYNPDFM VCSFYKVFGE NPSGFGCLFV 240
  241 KKSTISILES STGPGMINLV PTDNPISLHA LEINRTQTDS EETYSFSSSV EYKGLDHVDS 300
  301 LGLVATGNRS RCLINWLVSA LYKLKHSTTS RLVKIYGPKV NFNRGPAVAF NLFNHKGEKI 360
  361 EPFIVQKLAE CSNISLGKSF LKNILFQEDY EGVKDRVFEK KRNRDVDEPR ISVLTAALGF 420
  421 LANFEDVYKL WIFVARFLDS EFVDKESVRC GVHVFEHKNR EVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.39794
Match: 1p3wB
Description: Cysteine desulfurase IscS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.76873005093488 bayes_pls_golite062009
transferase activity 0.3093369052482 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle