YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: KRP4_ARATH
Organism: Arabidopsis thaliana
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRP4_ARATH.

Description E-value Query
Range
Subject
Range
gi|30685413, gi|... - gi|30685413|ref|NP_850196.1| KRP4; cyclin binding / cyclin-dependent protein kinase inhibitor [Arabi...
276.0 [0..1] [289..1]

Back

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ  60
   61 QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSYLQLRSRR LQKKPPIVVI RSTKRRKQQR RNETCGRNPN PRSNLDSIRG DGSRSDSVSE  60
   61 SVVFGKDKDL ISEINKDPTF GQNFFDLEEE HTQSFNRTTR ESTPCSLIRR PEIMTTPGSS 120
  121 TKLNICVSES NQREDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [236-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSRSHRRRPT TPEMDEFFSG AEEEQQKQFI EKYNFDPVNE QPLPGRFEWT KVDD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.18
Match: 1jsuC
Description: P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle