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View Structure Prediction Details

Protein: FOX4_ARATH
Organism: Arabidopsis thaliana
Length: 552 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FOX4_ARATH.

Description E-value Query
Range
Subject
Range
gi|20260668 - gi|20260668|gb|AAM13232.1| unknown protein [Arabidopsis thaliana]
395.0 [0..1] [552..1]

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Predicted Domain #1
Region A:
Residues: [1-552]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEAFVFLLC LTNKFPKKFN SCSKKKETLY VLGLVLLVSF IEAPVTKPNF GKFIECLRDR  60
   61 TTPENPITDV ISIADNSTTF LSSYVSYTKN KRFSSPNFKK LLAIIAAKHV SHVQATVVCA 120
  121 KSNGIQLRIR SGGHDNEGFS YMSSVPFVIL DMHNLRSIDV NLSRKNAWVQ AGATLGELYV 180
  181 KINEASQTLA FPAGVCPTVG AGGHISGGGF GNLMRKFGIT VDHVIDAQII DVNGKLLNRA 240
  241 AMGEDLFWAI RGGGSSFGVI LSWKINLVEV PKILTVFKVN KTLEQGGTDI LYKWQLVANK 300
  301 LPDSLFITAW PRTVNGPKPG ERTVAVVFYA QFLGPTDKLM EIMDQSFPEL GLGREDCHEM 360
  361 SWLNTTLFWA NYPAGTPKSI LLDRPPTNSV SFKSKSDFVK KPIPKKGLEK LWKTMFKFNS 420
  421 SVSLQFNPYG GVMDRIPATA TAFPHRKGNL FKVQYSTMWF DANATESSLA MMNELFEVAE 480
  481 PYVSSNPREA FFNFRDIDIG SNPSGETNVD EAKIYGSKYF LGNLKRLMDV KAKYDPDNFF 540
  541 KNEQSIPPVR VK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle