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View Structure Prediction Details

Protein: DEXHC_ARATH
Organism: Arabidopsis thaliana
Length: 2171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for DEXHC_ARATH.

Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLGGGAEA HARFKQYEYR ANSSLVLTTD NRPRDTHEPT GEPETLWGKI DPRSFGDRVA  60
   61 KG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPQELEDKLK KSKKKERDVV DDMVNIRQSK RRRLREESVL TDTDDAVYQP KTKETRAAYE  60
   61 AMLGLIQKQL GGQPPSIVSG AADEILAVLK NDAFRNPEKK MEIEKLLNKI ENHEFDQLVS 120
  121 IGKLITDFQE GGDSGGGRAN DDEGLDDDLG VAVEFEENEE DDEESDPDMV EEDDDEEDDE 180
  181 PTRTGGMQVD AGINDEDAGD ANEGTNLNVQ DIDAYWLQRK ISQAYEQQID PQQCQVLAEE 240
  241 LLKILAEGDD RVVEDKLLMH LQYEKFSLVK FLLRNRLKVV WCTRLARAED QEERNRIEEE 300
  301 MRGLGPELTA IVEQLHATRA TAKEREENLQ KSINEEARRL KDET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [407-490]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGDGGRGRRD VADRDSESGW VKGQRQMLDL ESLAFDQGGL LMANKKCDLP PGSYRSHGKG  60
   61 YDEVHVPWVS KKVDRNEKLV KITE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [491-954]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDWAQPAFK GMQQLNRVQS KVYDTALFKA ENILLCAPTG AGKTNVAMLT ILQQLEMNRN  60
   61 TDGTYNHGDY KIVYVAPMKA LVAEVVGNLS NRLKDYGVIV RELSGDQSLT GREIEETQII 120
  121 VTTPEKWDII TRKSGDRTYT QLVRLLIIDE IHLLHDNRGP VLESIVARTL RQIETTKENI 180
  181 RLVGLSATLP NYEDVALFLR VDLKKGLFKF DRSYRPVPLH QQYIGISVKK PLQRFQLMND 240
  241 LCYQKVLAGA GKHQVLIFVH SRKETSKTAR AIRDTAMAND TLSRFLKEDS VTRDVLHSHE 300
  301 DIVKNSDLKD ILPYGFAIHH AGLSRGDREI VETLFSQGHV QVLVSTATLA WGVNLPAHTV 360
  361 IIKGTQVYNP EKGAWMELSP LDVMQMLGRA GRPQYDQHGE GIIITGYSEL QYYLSLMNEQ 420
  421 LPIESQFISK LADQLNAEIV LGTVQNAREA CHWLGYTYLY IRMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.39794
Match: 1gl9B
Description: Helicase-like "domain" of reverse gyrase; Topoisomerase "domain" of reverse gyrase
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [955-1149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNPTLYGLAP DALAKDVVLE ERRADLIHSA ATILDKNNLV KYDRKSGYFQ VTDLGRIASY  60
   61 YYITHGTIAT YNEHLKPTMG DIDLYRLFSL SDEFKYVTVR QDEKMELAKL LDRVPIPIKE 120
  121 TLEEPSAKIN VLLQAYISQL KLEGLSLTSD MVYITQSAGR LVRALYEIVL KRGWAQLAEK 180
  181 ALNLSKMVGK RMWSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [1150-1286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTPLRQFHGL SNDILMQLEK KDLVWERYYD LSAQELGELI RSPKMGKPLH KFIHQFPKVT  60
   61 LSAHVQPITR TVLNVELTVT PDFLWDEKIH KYVEPFWIIV EDNDGEKILH HEYFLLKKQY 120
  121 IDEDHTLHFT VPIFEPL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1287-1328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPQYFVRVVS DKWLGSETVL PVSFRHLILP EKYPPPTELL DL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.30103
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #8
Region A:
Residues: [1329-2044]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLPVTALRN PNYEILYQDF KHFNPVQTQV FTVLYNTNDN VLVAAPTGSG KTICAEFAIL  60
   61 RNHHEGPDAT MRVVYIAPLE AIAKEQFRIW EGKFGKGLGL RVVELTGETA LDLKLLEKGQ 120
  121 IIISTPEKWD ALSRRWKQRK YVQQVSLFIV DELHLIGGQH GPVLEVIVSR MRYISSQVIN 180
  181 KIRIVALSTS LANAKDLGEW IGASSHGLFN FPPGVRPVPL EIHIQGVDIS SFEARMQAMT 240
  241 KPTYTAIVQH AKNKKPAIVF VPTRKHVRLT AVDLMAYSHM DNPQSPDFLL GKLEELDPFV 300
  301 EQIREETLKE TLCHGIGYLH EGLSSLDQEI VTQLFEAGRI QVCVMSSSLC WGTPLTAHLV 360
  361 VVMGTQYYDG RENSHSDYPV PDLLQMMGRA SRPLLDNAGK CVIFCHAPRK EYYKKFLYEA 420
  421 FPVESQLQHF LHDNFNAEVV AGVIENKQDA VDYLTWTFMY RRLPQNPNYY NLQGVSHRHL 480
  481 SDHLSELVEN TLSDLEASKC IEVEDEMELS PLNLGMIASY YYISYTTIER FSSLLSSKTK 540
  541 MKGLLEILTS ASEYDMIPIR PGEEDTVRRL INHQRFSFEN PKCTDPHVKA NALLQAHFSR 600
  601 QNIGGNLAMD QRDVLLSATR LLQAMVDVIS SNGWLNLALL AMEVSQMVTQ GMWERDSMLL 660
  661 QLPHFTKDLA KRCQENPGKN IETVFDLVEM EDEERQELLK MSDAQLLDIA RFCNRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.522879
Match: 2va8A
Description: No description for 2va8A was found.

Predicted Domain #9
Region A:
Residues: [2045-2171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNIDLTYEIV GSEEVNPGKE VTLQVMLERD MEGRTEVGPV DSLRYPKTKE EGWWLVVGDT  60
   61 KTNQLLAIKR VSLQRKVKVK LDFTAPSEPG EKSYTLYFMC DSYLGCDQEY SFSVDVKGSG 120
  121 AGDRMEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.221849
Match: 2q0zX
Description: No description for 2q0zX was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle