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View Structure Prediction Details

Protein: gi|15241478, gi|...
Organism: Arabidopsis thaliana
Length: 542 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241478, gi|....

Description E-value Query
Range
Subject
Range
gi|23198322, gi|... - gi|23198322|gb|AAN15688.1| berberine bridge enzyme-like protein [Arabidopsis thaliana], gi|16648925|...
421.0 [0..1] [542..1]

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Predicted Domain #1
Region A:
Residues: [1-542]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNSKPLPTI SCISVFALYF SFYTITLTSS TSLQDDFIKC LYRNTNVRFT LDKTFFTPER  60
   61 NASIFTEVLE STAQNQRYLT KTMPKPGFIF KPVHESHVQA SVICSKKLEI HFRVRSGGHD 120
  121 YEGVSYVSQI EKPFVLIDLS KLRQINVDIK DTSAWVEAGA TVGELYYRIA EKSKFHGFPA 180
  181 GVYPSLGIGG HITGGAYGSL MRKYGLAADN VLDAKIVDAN GKLLDRASMG EDLFWAIRGG 240
  241 SGGSFGIILS WKIKLVPVPE TLTVFTVTKT FEQDRSFKIL SKWQEIADNL VDELFLRVFF 300
  301 TVSGNKANKT VTMAYIGQFL GEKGTLMEVM KKDFPELGLT QKDCIEMSWI DSIIYNSGFP 360
  361 TNPPPPIEIL LQAKSPIGKV YFKGKSDFAK KPIPVLGLEG MFKKLLEEDA ALVIWTPYGG 420
  421 KMDKIPESEI PFPHRNGTNF MIQYYRSWSD SEKRPNRRTK WIRELYGYMT PYVSSNPRQA 480
  481 YVNYRDLDLG QNKDNSKSNF IEAKIWGANY FKDNFNRLVR IKSKVDPDNF FRHEQSIPTL 540
  541 PV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle