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View Structure Prediction Details

Protein: gi|22655440, gi|...
Organism: Arabidopsis thaliana
Length: 259 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22655440, gi|....

Description E-value Query
Range
Subject
Range
gi|21593899 - gi|21593899|gb|AAM65866.1| unknown [Arabidopsis thaliana]
270.0 [0..14] [259..1]

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Predicted Domain #1
Region A:
Residues: [1-100]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDGEGDKK RETMAVMSLM KDQQNPIQQF QVKFKEIETG FKSWLSKQKL PVEAAVVTAM  60
   61 GGVQGAFIGG LMGTLSPEMP QAGIDPQAMA SLKQTQALVG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [101-259]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLVQARNFA AITGVNAGIA CVMKRIRGKE DLESAVVAAF GSGVAYSLVS AGLQGQPMNA  60
   61 ITTAAGFAVF QGVFFKLGER FSKPSVEDPY YTRGRSMLLK LGLEKYEKNF KKGLLADPTL 120
  121 PLLTDSALRD VSIPPGPRLL ILDHIQRDPE LKGKRGSRG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.41
Match: 2b6gA
Description: RNA recognition by the Vts1 SAM domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle