YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: TMN7_ARATH
Organism: Arabidopsis thaliana
Length: 641 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMN7_ARATH.

Description E-value Query
Range
Subject
Range
TMN6_ARATH - Transmembrane 9 superfamily member 6 OS=Arabidopsis thaliana GN=TMN6 PE=2 SV=1
849.0 [0..5] [641..1]
gi|53791995, gi|... - gi|53793336|dbj|BAD54557.1| putative PHG1A protein [Oryza sativa Japonica Group], gi|53791995|dbj|BA...
835.0 [0..27] [641..34]
gi|50758867 - gi|50758867|ref|XP_417455.1| PREDICTED: similar to Transmembrane 9 superfamily protein member 4 [Gal...
819.0 [0..23] [641..162]
gi|92897792 - gi|92897792|gb|ABE93901.1| Nonaspanin (TM9SF) [Medicago truncatula]
813.0 [0..8] [641..6]

Back

Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTKGSSFR FYATLLLSFL SFSLSRAFYL PGVAPRDFQK GDPLYVKVNK LSSTKTQLPY  60
   61 DYYYLNYCKP PKILNNAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLGEVLRGDR IENSVYTFQM LEDQPCKVGC RVKLNADSTK NFKEKIDDEY RANMILDNLP  60
   61 VAVLRQRRDG SQSTTYEHGF RVGFKGSYEG SKEEKYFIHN HLSFRVMYHR DQESDSARIV 120
  121 GFEVTPNSIL HEYKEWDEKN P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [220-311]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLTTCNKDTK NLIQGNTVPQ EVEQGKEIVF TYDVSFKESE IKWASRWDTY LLMNDDQIHW  60
   61 FSIINSLMIV LFLSGMVAMI MMRTLYKDIS NY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [312-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQLETQDEAQ EETGWKLVHG DVFRPPVNSG LLCVYVGTGV QIFGMSLVTM MFALLGFLSP  60
   61 SNR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [375-510]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGLMTAMVLL WVFMGIFAGY SSSRLHKMFK GNKWKRMTLK TAFMFPGILF AIFFVLNALI  60
   61 WGEQSSGAIP FGTMFALFCL WFGISVPLVF VGSYLGYKKP AIEDPVKTNK IPRQVPEQPW 120
  121 YMKPVFSILI GGILPF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [511-641]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVFIELFFI LTSIWLNQFY YIFGFLFIVF LILIVTCAEI TVVLCYFQLC SEDYNWWWRA  60
   61 YLTAGSSAFY LFLYSIFYFF TKLEITKLVS GMLYFGYMII ISYAFFVLTG TIGFYACFWF 120
  121 VRKIYSSVKI D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle