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View Structure Prediction Details

Protein: gi|15239215, gi|...
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15239215, gi|....

Description E-value Query
Range
Subject
Range
gi|222642062, gi... - gi|222642062|gb|EEE70194.1| hypothetical protein OsJ_30279 [Oryza sativa Japonica Group], gi|1154805...
gi|218202602 - gi|218202602|gb|EEC85029.1| hypothetical protein OsI_32333 [Oryza sativa Indica Group]
192.0 [0..1] [395..1]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFLELLEVA SMPIVQVLLI SVLGAFLATD YCSLLSADTR RSVNKLVFVV FTPCIMFANL  60
   61 AETVTLQDII SWWFMPINVG ITFLVGGILG WLVVKLLNPK PQLHGLIIAT CASGNMGNLM 120
  121 LILVPAICDE EGSPFGNRSV CRSIGLSYAS FSMALGGFYI WTYSYQLVRS SATQFRALEA 180
  181 AGLVKSPNKD IDSDPHALLL KP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [203-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HQNQDLEIQG KQKVSTRTYI KDLLHQILEE LFAPPTIGAI LGFVFGATNW LRNLIIGENA  60
   61 PLRVIQDSVK LLGEGTIPCI TLILGGNLIQ GLRSSAVKKS VIVGVIIVRY ILLPVVGVGV 120
  121 VQLAGNLGYL PPDPLFRYVL MLQFALPPAM NISTMAQLFD VAQDECSVIF LWTYLVASLA 180
  181 LTVWSTIFLS ILS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle