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View Structure Prediction Details

Protein: CSLB4_ARATH
Organism: Arabidopsis thaliana
Length: 755 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLB4_ARATH.

Description E-value Query
Range
Subject
Range
gi|9622882, gi|1... - gi|9622882|gb|AAF89965.1|AF200529_1 cellulose synthase-5 [Zea mays], gi|162460565|ref|NP_001104955.1...
777.0 [0..2] [754..252]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESSSPLPP LCERISHKSY FLRAVDLTIL GLLLSLLLYR ILHVNQKDTV WIVAFLCETC  60
   61 FTFVWLLITN IKWSPAD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKTYPERLDE RVHELPPVDM FVTTADPVRE PPLIVVNTVL SLLAVNYPAN KLACYVSDDG  60
   61 CSPLTYFSLK EASKFAKIWV PFCKKYNVRV RAPFMYFRNS PEAAEGSEFS KDWEMTKREY 120
  121 EKLSQKVEDA TGSSHWLDAE DDFEAFLNTK SNDHSTIVKV VWENKGGVGD EKEVPHVVYI 180
  181 SREKRPNHFH HYKAGAMNFL VRVSGLMTNA PYMLNVDCDM YVNEADVVRQ AMCIFLQKSM 240
  241 DSNHCAFVQY PQDFYDSNVG ELTVLQLYLG RGIAGIQGPQ YAGSGCFHTR RVMYGLSLDD 300
  301 LGDDGSLSSI ATRKYLAEES LTREFGNSKE MVKSVVDALQ RKPFPQKNLK DSLETAQEMG 360
  361 HCHYEYQTSW GKNIGWLYDS TTEDVNTSIG IHSRGWTSSY IFPDPPAFLG CMPQGGPEVM 420
  421 VQQRRWATGL LEILFNKQSP LIGMF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.55
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #3
Region A:
Residues: [523-755]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CRKIRFRQSL AYLYVFSWGL RSIPELFYCL LPAYCLLHNS ALFPKGVYLG IIITLVGIHC  60
   61 LYTLWEFMNL GFSIQSWYVT QSFGRIKTTC SWLFSVLDVI LKLLGISKTV FIVTKKTMPE 120
  121 TKSGSGSKKS QREVDCPNQD SGKFEFDGSL YFLPGTFIVL VNLAALAGCL VGLQSRGGGG 180
  181 SGLAEACGCI LVVILFLPFL KGMFEKGKYG IPFSTLSKAA FLAALFVVLS VGN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle