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View Structure Prediction Details

Protein: LSM3B_ARATH
Organism: Arabidopsis thaliana
Length: 98 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSM3B_ARATH.

Description E-value Query
Range
Subject
Range
gi|5870130 - gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens]
109.0 [0..8] [97..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE  60
   61 IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.522879
Match: 1d3bB
Description: B core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle