YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|79314019, gi|...
Organism: Arabidopsis thaliana
Length: 460 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79314019, gi|....

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
243.0 [0..31] [426..965]

Back

Predicted Domain #1
Region A:
Residues: [1-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVVGDVAPI PRRNSSTCSN DIAAPLLPEC HGDEVAHDEF NGASFSGAVF NLATTIIGAG  60
   61 IMALPATMKI LGLGLGITMI VVMAFLTDAS IEFLLRFSKA GKNRSYGGLM GGSFGNPGRI 120
  121 LLQVAVLVNN IGVLIVYMII IGDVLAGKTE DGIHHFGVLE GWFGHHWWNG RAAILLITTL 180
  181 GVFAPLACFK RIDSLKFTSA LSVALAVVFL IITAGISIMK LISGGVAMPR LLPDVTDLTS 240
  241 FWNLFTVVPV LVTAFICHYN VHSIQNELED PSQIRPVVRS ALMLCSSVYI MTSIFGFLLF 300
  301 GDDTLDDVLA NFDTDLGIPF GSILNDAVRV SYALHLMLVF PIVFYPLRIN IDGLLFPSAR 360
  361 SLSTSNVRFG CLTAGLISVI FLGANFIPSI WDAFQFTGAT AAVCLGFIFP ASIILKDRHD 420
  421 KATNRDTTLA IFMIVLAVLS NAIAIYSDAY ALFKKNAPRE 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.72
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle