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View Structure Prediction Details

Protein: ATB15_ARATH
Organism: Arabidopsis thaliana
Length: 836 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ATB15_ARATH.

Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSCKDGKL GCLDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
   61 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VHENSYFRQH 120
  121 TPNPSLPAKD TSCESVVTSG QHQLASQNPQ RDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.522879
Match: 2cueA
Description: Solution structure of the homeobox domain of the human paired box protein Pax-6
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [154-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM PGMKPGPDSI GIIAISHGCT GVAARACGLV  60
   61 GLEPTRVAEI VKDRPSWFRE CRAVEVMNVL PTANGGTVEL LYMQLYAPTT LAPPRDFWLL 120
  121 RYTSVLEDGS LVVCERSLKS TQNGPSMPLV QNFVRAEMLS SGYLIRPCDG GGSIIHIVDH 180
  181 MDLEACSVPE VLRPLYESPK VLAQKTTMAA LRQLKQIAQE VTQTNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 2psoA
Description: No description for 2psoA was found.

Predicted Domain #3
Region A:
Residues: [380-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVNGWGRRPA ALRALSQRLS RGFNEAVNGF TDEGWSVIGD SMDDVTITVN SSPDKLMGLN  60
   61 LTFANGFAPV SNVVLCAKAS MLLQNVPPAI LLRFLREHRS EWADNNIDAY LAAAVKVGPC 120
  121 SARVGGFGGQ VILPLAHTIE HEEFMEVIKL EGLGHSPEDA IVPRDIFLLQ LC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [552-679]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGMDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR TLDLASALEI  60
   61 GSAGTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII SSVQRVALAL 120
  121 SPSHISSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [680-836]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGLRTPLGTP EAQTLARWIC QSYRGYMGVE LLKSNSDGNE SILKNLWHHT DAIICCSMKA  60
   61 LPVFTFANQA GLDMLETTLV ALQDISLEKI FDDNGRKTLC SEFPQIMQQG FACLQGGICL 120
  121 SSMGRPVSYE RAVAWKVLNE EENAHCICFV FINWSFV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 93.69897
Match: PF08670.3
Description: No description for PF08670.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle