YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|6552744, gi|1...
Organism: Arabidopsis thaliana
Length: 538 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6552744, gi|1....

Description E-value Query
Range
Subject
Range
gi|6573725, gi|2... - gi|6573725|gb|AAF17645.1|AC009978_21 T23E18.10 [Arabidopsis thaliana], pir||E96789 protein T23E18.10...
424.0 [0..1] [536..1]

Back

Predicted Domain #1
Region A:
Residues: [1-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKSMNTRA MITTLLFLIS LAFAEDPYRF FEWHVTYGNI SPLGVAQQGI LINGKFPGPD  60
   61 IISITNDNLI INVFNHLDEP FLLSWNGIRN WKNSFQDGVY GTMCPIPPGK NYTYALQVKD 120
  121 QIGSFYYFPS LGFHKAAGGF GGIRISSRAL IPVPFPTPAD DYTLLVGDWY KTNHKDLKAQ 180
  181 LDNGGKLPLP DGILINGRSS GATLNIEPGK TYRLRISNVG LQNSLNFRIQ NHTMKLVEVE 240
  241 GRYTIQNLFS SLDVHVGQSY SVLITADQPA KDYYVVVSSR FTSKILTTTG VLHYSNSVAP 300
  301 VSGPIPDGPI KLSWSFNQAR AIRTNLTASG PRPNPQGSYR YGVINITRTI RLANNLGHIE 360
  361 GKQRYAVNSA SFYPADTPLK LVDYFKIDGV YKPGSISDQP TNGAIFPTTS VMQADFRAFV 420
  421 EVIFENSEDI VQSWHLDGYS FYVVGMELGK WSPASRKVYN LNDAILRCTI QVYPRSWTAI 480
  481 YIALDNVGMW NMRSEIWERQ YLGQQFYMRV YTTSTSLRDE YLIPKNALLC GRASSSHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 96.09691
Match: 1aozA
Description: Ascorbate oxidase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle