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View Structure Prediction Details

Protein: RK10_ARATH
Organism: Arabidopsis thaliana
Length: 220 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK10_ARATH.

Description E-value Query
Range
Subject
Range
RK10_TOBAC - 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1
204.0 [0..1] [220..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVALLSFSS SLSPLCHQRI STLTPKTSNS PNYPRLPVIR SAVSRNKKEE TVEAVKSHLE  60
   61 NCHLLAAINY KGLTVKQFQD LRRTLPDTTK LIVAKNTLVF KAIEGTKWEA LKPCMKGMNA 120
  121 WLFVQTDEIP SAIKPYRSFQ KERKLENNDF AGAVFEGKFY APDNFKVLET MPTRAEVYAK 180
  181 MLGALQSPAI NLVTTLQAPA REVIMVLMAY IKKLEDESNA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 41.69897
Match: 1zavA
Description: Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 3.24907053933923 bayes_pls_golite062009
structural molecule activity 2.96620336163367 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle