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View Structure Prediction Details

Protein: PAP3_ARATH
Organism: Arabidopsis thaliana
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP3_ARATH.

Description E-value Query
Range
Subject
Range
gi|20148241, gi|... - gi|20148241|gb|AAM10011.1| putative fibrillin [Arabidopsis thaliana], gi|14596235|gb|AAK68845.1| put...
429.0 [0..1] [376..1]
gi|14248552 - gi|14248552|gb|AAK57563.1| plastid-lipid associated protein PAP3 [Brassica rapa]
gi|14248552|gb|A... - plastid-lipid associated protein PAP3 [Brassica rapa]
378.0 [0..1] [376..1]
gi|83743301 - gi|83743301|gb|ABC42191.1| plastid lipid associated protein CHRC [Lycopersicon esculentum]
323.0 [0..70] [375..5]
PAP_CITUN - Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1
320.0 [0..70] [374..5]
PAP3_ORYSA - Probable plastid-lipid-associated protein 3, chloroplast precursor - Oryza sativa (Rice)
PAP3_ORYSJ - Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 P...
319.0 [0..4] [375..7]
LIPC_SOLTU - Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2
316.0 [0..70] [375..5]
LIPC_SOLDE - Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1
314.0 [0..70] [375..5]
gi|87240799 - gi|87240799|gb|ABD32657.1| PAP fibrillin [Medicago truncatula]
312.0 [0..79] [374..19]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFTVARP SSLLYVSSIN PSKTFSPSIS LKLNSLSFSF GYRPKPLRFS KIRSSLPSES  60
   61 ESESDLDASA VTDEWGEKPG DANEPDSQPD NVTVNVITDE WGEKSGPELE ESGTRFMESD 120
  121 PPRNEDEWGG EIGGETEADA GNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAVSDPTWEL KRCLADSVYG TELGFKAGSE VRAEVLELVN QLEALNPTPA PLENPELLDG  60
   61 NWVLLYTAFS ELIPLLAAGS TPLLKVKSIS QSIDTNNLII DNSTTLSSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [253-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FADFSFSATA SFEVRSPSRI EVSFKEGTLK PPVIKSSVDL PESVGVFGQQ ISLSLLKQSL  60
   61 NPLQDVAANI SRALSGQPPL KLPFPGNRGS SWLLTTYLDK DLRISRGDGG LFVLAREGSS 120
  121 LLEL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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