YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: B120_ARATH
Organism: Arabidopsis thaliana
Length: 849 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for B120_ARATH.

Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFRKTSLY LSLFLYFFLY ESSMAANTIR RGESLRDGIN HKPLVSPQKT FELGFFSPGS  60
   61 STHRFLGIWY GNIEDKAVVW VANRATPISD QSGVLMISND GNLVLLDGKN ITVWSSNIES 120
  121 STTNNNNRVV SIHDTGNFVL SETDTDRPIW ESFNHPTDTF LPQMRVRVNP QTGDNHAFVS 180
  181 WRSETDPSPG NYSLGVDPSG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.30103
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [201-468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APEIVLWEGN KTRKWRSGQW NSAIFTGIPN MSLLTNYLYG FKLSSPPDET GSVYFTYVPS  60
   61 DPSVLLRFKV LYNGTEEELR WNETLKKWTK FQSEPDSECD QYNRCGKFGI CDMKGSNGIC 120
  121 SCIHGYEQVS VGNWSRGCRR RTPLKCERNI SVGEDEFLTL KSVKLPDFEI PEHNLVDPED 180
  181 CRERCLRNCS CNAYSLVGGI GCMIWNQDLV DLQQFEAGGS SLHIRLADSE VGENRKTKIA 240
  241 VIVAVLVGVI LIGIFALLLW RFKRKKDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 2ahxA
Description: Crystal structure of ErbB4/HER4 extracellular domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [469-849]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGAYCGKNTD TSVVVADLTK SKETTSAFSG SVDIMIEGKA VNTSELPVFS LNAIAIATND  60
   61 FCKENELGRG GFGPVYKGVL EDGREIAVKR LSGKSGQGVD EFKNEIILIA KLQHRNLVRL 120
  121 LGCCFEGEEK MLVYEYMPNK SLDFFLFDET KQALIDWKLR FSIIEGIARG LLYLHRDSRL 180
  181 RIIHRDLKVS NVLLDAEMNP KISDFGMARI FGGNQNEANT VRVVGTYGYM SPEYAMEGLF 240
  241 SVKSDVYSFG VLLLEIVSGK RNTSLRSSEH GSLIGYAWYL YTHGRSEELV DPKIRVTCSK 300
  301 REALRCIHVA MLCVQDSAAE RPNMASVLLM LESDTATLAA PRQPTFTSTR RNSIDVNFAL 360
  361 DSSQQYIVSS NEITSTVVLG R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle