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View Structure Prediction Details

Protein: gi|15241498, gi|...
Organism: Arabidopsis thaliana
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15241498, gi|....

Description E-value Query
Range
Subject
Range
gi|5262222, gi|1... - pir||T10624 reticuline oxidase homolog F21C20.170 - Arabidopsis thaliana, gi|7268878|emb|CAB79082.1...
354.0 [0..1] [528..1]

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Predicted Domain #1
Region A:
Residues: [1-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSSFLFTI LLFSLNISPL VSAHGSNHED FLKCLSYRMN DNTVEPKVIH TSKDSSFFSI  60
   61 LDSSIQNPRF SVSETPKPVS IITPVKASDV QTVIRCAQLH GIHVRTRSAG HCYEGLSYIA 120
  121 YNKPFAVIDL RNLRSISLDV DNRTGWVQTG ATAGELYYEI GKTTKSLAFP AGIHPTVGVG 180
  181 GQFSGGGYGT LLRKYGLAAD NIIDALVVDA SGRILDRQAM GEDYFWAIRG GGGSSFGVIL 240
  241 SWKVKLVDVP STITVFKVQK TSKKEAVRII KKWQYAADKV PDDLFIRTTL ERSNKNAVHA 300
  301 LFTGLYIGPV NNLLALMEEK FPELGLEKEG CEEMSWIESV LWFADFPKGE SLGVLTNRER 360
  361 TSLSFKGKDD FVQEPIPEAA IQEIWRRLEA PEARLGKIIL TPFGGKMSEM AEYETPFPHR 420
  421 GGNLYEIQYV AYWREEEDKN KTETDKYLKW VDSVYEFMTP YVSKSPRGAY VNFKDMDLGM 480
  481 YLGKKKTKYE EGKSWGVKYF KNNFERLVRV KTRVDPTDFF CDEQSIPLVN KVT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.522879
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle