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View Structure Prediction Details

Protein: CCB21_ARATH
Organism: Arabidopsis thaliana
Length: 429 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCB21_ARATH.

Description E-value Query
Range
Subject
Range
gi|728519 - gi|728519|emb|CAA83275.1| cyclin 2a protein [Arabidopsis thaliana]
342.0 [0..1] [429..1]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNSCENKIF VKPTSTTILQ DETRSRKFGQ EMKREKRRVL RVINQNLAGA RVYPCVVNKR  60
   61 GSLLSNKQEE EEGCQKKKFD SLRPSVTRSG VEEETNKKLK PSVP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SANDFGDCIF IDEEEATLDL PMPMSLEKPY IEADPMEEVE MEDVTVEEPI VDIDVLDSKN  60
   61 SLAAVEYVQD LYAFYRTMER FSCVPVDYMM QQIDLNEKMR AILIDWLIEV HDKFDLINET 120
  121 LFLTVNLIDR FLSKQNVMRK KLQLVGLVAL LLACKYEEVS VPVVEDLVLI SDKAYTRNDV 180
  181 LEMEKTMLST LQFNISLPTQ YPFLKRFLKA AQADKKCEVL ASFLIELALV EYEMLRFPPS 240
  241 LLAATSVYTA QCTLDGSRKW NSTCEFHCHY SEDQLMECSR KLVSLHQRAA TGNLTGVYRK 300
  301 YSTSKFGYIA KCEAAHFLVS ESHHS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.69897
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle