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View Structure Prediction Details

Protein: PSD7B_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD7B_ARATH.

Description E-value Query
Range
Subject
Range
gi|17297979 - gi|17297979|dbj|BAB78487.1| 26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa Jap...
345.0 [0..1] [305..1]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIKTQQIS ARTIEKVIVH PLVLLSIVDH YNRVAKDTSK RVVGVLLGSS SRGTVDVTNS  60
   61 YAVPFEEDDK DTSIWFLDHN YHESMFHMFK RINAKEHIVG WYSTGPKLRE NDLDVHALFN 120
  121 GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV 180
  181 EHLLRDVKDT TISTLATEVT AKLTALKGLD ARLREIRTYL DLVIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.69897
Match: 2o95A
Description: No description for 2o95A was found.

Predicted Domain #2
Region A:
Residues: [226-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKLPLNHEIL YHLQDVFNLL PNLNVNELVK AFAVKTNDMM LVIYLSSLIR SVIALHSLIN  60
   61 NKLLNKEHEK AEDSKPVDIP LITES

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle