YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|6714296, gi|1...
Organism: Arabidopsis thaliana
Length: 180 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6714296, gi|1....

Description E-value Query
Range
Subject
Range
gi|25354706, gi|... - gi|84778482|dbj|BAE73268.1| xylogen like protein 12 [Arabidopsis thaliana], pir||E96594 unknown prot...
117.0 [0..2] [180..3]

Back

Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVRFAVAV VLVFCYVTSS NAQMTSPPSG GAGGDAHSLP CIQKLMPCQP YLHLATPPPA  60
   61 TCCMPLNEIV AKDATCLCAV FNNVDMLKSL NLTKENALDL PKACGAKADV SLCKTSAGTN 120
  121 SSSTPPATPK TPPASSTSTG TGSGSTGNAA PSTAKPTSSA PAINFGGLSF ASAVVATLFF 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1be2A
Description: LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle