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View Structure Prediction Details

Protein: FD4L2_ARATH
Organism: Arabidopsis thaliana
Length: 279 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FD4L2_ARATH.

Description E-value Query
Range
Subject
Range
FAD4_ARATH - Fatty acid desaturase 4, chloroplastic OS=Arabidopsis thaliana GN=FAD4 PE=1 SV=1
422.0 [0..1] [277..1]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSLQTKYT LNPITNNIPR SHRPSFLRVT STTNSQPNHE MKLVVEQRLV NPPLSNDPTL  60
   61 QSTWTHRLWV AAGCTTVFVS FSKSIIGAFG SHLWLEPSLA GFAGYILADL GS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.561 a.23.5 Hemolysin expression modulating protein HHA
View Download 0.504 a.39.1 EF-hand
View Download 0.323 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.303 a.35.1 lambda repressor-like DNA-binding domains
View Download 0.287 a.108.1 Ribosomal protein L7/12, oligomerisation (N-terminal) domain

Predicted Domain #2
Region A:
Residues: [113-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVYHWATDNY GDESTPLVGI HIEDSQDHHK CPWTITKRQF ANNLHFMARG TTLIVLPLDL  60
   61 AFDDHVVHGF VSMFAFCVLF CQLFHAWAHG TKSKLPPLVV GLQDIGLLVS RIHHMNHHRA 120
  121 PYNNNYCVVS GVWNKVLDES NVFKAMEMVL YIQLGVRPRS WTEPNYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle