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View Structure Prediction Details

Protein: GATLA_ARATH
Organism: Arabidopsis thaliana
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATLA_ARATH.

Description E-value Query
Range
Subject
Range
GATL9_ARATH - Probable galacturonosyltransferase-like 9 OS=Arabidopsis thaliana GN=GATL9 PE=2 SV=1
251.0 [0..2] [354..7]

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Predicted Domain #1
Region A:
Residues: [1-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSGSRLASR LIIIFSIIST SFFTVESIRL FPDSFDDASS DLMEAPAYQN GLDCSVLAKN  60
   61 RLLLACDPSA VHIAMTLDPA YLRGTVSAVH SILKHTSCPE NIFFHFIASG TSQGSLAKTL 120
  121 SSVFPSLSFK VYTFEETTVK NLISSSIRQA LDSPLNYARS YLSEILSSCV SRVIYLDSDV 180
  181 IVVDDIQKLW KISLSGSRTI GAPEYCHANF TKYFTDSFWS DQKLSSVFDS KTPCYFNTGV 240
  241 MVIDLERWRE GDYTRKIENW MKIQKEDKRI YELGSLPPFL LVFGGDIEAI DHQWNQHGLG 300
  301 GDNIVSSCRS LHPGPVSLIH WSGKGKPWVR LDDGKPCPID YLWAPYDLHK SQRQYLQYNQ 360
  361 ELEIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.0
Match: 1zcvA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Asn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle