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View Structure Prediction Details

Protein: gi|110742615, gi...
Organism: Arabidopsis thaliana
Length: 611 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110742615, gi....

Description E-value Query
Range
Subject
Range
gi|115459218, gi... - gi|50925995|ref|XP_473043.1| OSJNBa0067K08.20 [Oryza sativa (japonica cultivar-group)], gi|38345391|...
678.0 [0..65] [607..98]

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Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSQDLSFSK TLNPSFSFRK SPLNSGVRRI VSVLPAITER NYAFSVKRSE LLLREDGGFR  60
   61 RDVRALAGRS KKKLGGGSSG GRIEGDSDMR KQVKRNAREK SKKLAESLFY RLYNNPDKSR 120
  121 SQILSSHPDK FTEEELEMIG LGYDRMVRFM DKDDPRLRHP YDWFKYGEFG PYSWRGVVVG 180
  181 DPVRGTISDE CVTMIGEVEN HEEFEKIEQH EMNIAFQKRV KELDSNVGLR YFWVFVRHPK 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [241-325]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRLSELPWEQ WTLVSEVVVE ADKKQRLDKW NLMGRLGNKS RSLICQCAAW FRPDIVYVKK  60
   61 PVFQCRFEPQ EDFFNSLIPY LNPVT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [326-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESGFVCEVED DEGRVELSTY YGGLCKMLKV RQTAFVDDVV NAYEKLSDEK KSRVLKFLLG  60
   61 NHPNELLHPY TKEWKAKLEE MELGCDAPDE DEDEISISGS SEKAEFSEWI EDEADNDDDD 120
  121 DDDDDDDGEV EEVDDDDNMV VDVEGNVEED SLEDEIEESD PEEDERYWEE QFNKATNNAE 180
  181 RMEKLAEMSM VV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [518-611]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDKFYEKQLK ALEEREKGEI EGDELEMRGK KAKVKPEEWK TVGYGRWMKK IKKSRIPPEL  60
   61 FLRAAVRPFV YRNLVKEIVL TRHAILEGEI GQKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle