YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|7484883, gi|7...
Organism: Arabidopsis thaliana
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7484883, gi|7....

Description E-value Query
Range
Subject
Range
gi|18655431, gi|... - gi|18655431|pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase Fro...
265.0 [0..18] [189..2]

Back

Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEENATPLQ PPQTQEDDEE EKAMYAIWAV PEDDVEDRLQ RLMEGLRSEF GGPAFDPHLT  60
   61 LVGPFPYKLT ASEAKRMFKS ACEGFKVYPA TVDQVSAGTS YFQCLYVSLR HTVEVMNAAG 120
  121 HFMAHFKPFT GKFYVPHMSI LYGDLTEREK KKALEKAYTL DSSLDGLNFK INRVALWITD 180
  181 ADVGSWVKVD EHTLIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.221849
Match: 1fsiA
Description: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.372436499192166 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle