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View Structure Prediction Details

Protein: gi|15810583, gi|...
Organism: Arabidopsis thaliana
Length: 365 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15810583, gi|....

Description E-value Query
Range
Subject
Range
gi|21593719 - gi|21593719|gb|AAM65686.1| unknown [Arabidopsis thaliana]
448.0 [0..1] [365..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPVGAEKK RVKRSSGSAS TSVRDSGSDS QPRKQAVKKD SFQLFAEKVR DHKGLESRWA  60
   61 VMEQARVEYF RGKDFVSFMK NNPDFKDILE EDKDLDTDDI ANVLLGKNLL VRCDRVTKTL 120
  121 RPGKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [126-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSTWPAHLE IFRDDQSFSE NDAFFAWTFE KRHPLWQTLL SFFWPVLTLA ICLFPVYPHR  60
   61 CKLIVLYSCA GILLMILSLL FVRAVAFGAM WILLGKRVWF FPNILAEEAT LKELFRFWPK 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.965
Match: 2h8aA
Description: No description for 2h8aA was found.

Predicted Domain #3
Region A:
Residues: [246-365]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDEEEPPKWT SRLFYTVVAI VVVMLLRRHA PDEAARARYQ RRMSNIIDDV LEWSPKLALS  60
   61 GLMENQQPVN ITDAANNSSD SAGGPDQTEE VDLDETQGED LDETQGKEEA EGWTDSDLKT 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle