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View Structure Prediction Details

Protein: gi|11908094, gi|...
Organism: Arabidopsis thaliana
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11908094, gi|....

Description E-value Query
Range
Subject
Range
gi|222615380, gi... - gi|77548358|gb|ABA91155.1| expressed protein [Oryza sativa (japonica cultivar-group)], gi|222615380|...
gi|218186144 - gi|218186144|gb|EEC68571.1| hypothetical protein OsI_36902 [Oryza sativa Indica Group]
472.0 [0..80] [328..89]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSAASPSL SLLSFTSKPP YPSGSQRLFA SFRTDGLFAP LTLKSRRGRG IVVKVDDVDA  60
   61 DGGGADEYDM 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEEVEEVDN KKDYDVEYDP LAAAIAAAGG GGDGDIAFVQ SKSFISTQGW DSDMVVDYRI  60
   61 NEDEFHKLSL MDCDFFIRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.857 N/A N/A d.17.1 Cystatin/monellin

Predicted Domain #3
Region A:
Residues: [150-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPDPDNDVYD FREMYVTPPD TDIYSIPRVL APMPQKYIRC AMSDYGCYNV TEPPIDAPRD  60
   61 PLYKSEREIS KVFLTKHYRN RRTNDPEFVL DLEEIYVIDS KTKSITRARV LVTVPGGRKR 120
  121 DRKDDLLVIR DNGTSFKIIH VGERDDPTTV IEREEWTKTR EDMEKHLRKL RDFSVSNWF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle