YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ARR5_ARATH
Organism: Arabidopsis thaliana
Length: 184 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARR5_ARATH.

Description E-value Query
Range
Subject
Range
gi|110801119, gi... - gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...
158.0 [0..22] [182..1]

Back

Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVLRPEML DISNDTSSLA SPKLLHVLAV DDSMVDRKFI ERLLRVSSCK VTVVDSATRA  60
   61 LQYLGLDGEN NSSVGFEDLK INLIMTDYSM PGMTGYELLK KIKESSAFRE IPVVIMSSEN 120
  121 ILPRIDRCLE EGAEDFLLKP VKLADVKRLR DSLMKAEERA FKNIMHKREL EANDIYSQLK 180
  181 RAKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.522879
Match: 1kgsA
Description: PhoB; PhoB receiver domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
signal transducer activity 2.07885074402355 bayes_pls_golite062009
molecular transducer activity 2.07885074402355 bayes_pls_golite062009
transcription regulator activity 1.72455852503325 bayes_pls_golite062009
two-component response regulator activity 1.53373140048441 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle