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View Structure Prediction Details

Protein: TPS28_ARATH
Organism: Arabidopsis thaliana
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS28_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
700.0 [0..53] [602..12]

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Predicted Domain #1
Region A:
Residues: [1-603]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAIRVFGPK LGSRLSIRSH TTAFPACKLS RFPLTSFPGK HAHLVLLKAT TIPLASGDKE  60
   61 NNRKFEKLGP SEWGNQFLFA HVDLSEMDAL EREIEALKPK VRDMFMSFKG MKSNKKNLFL 120
  121 IYLLVSLGLA HHFEDEIEES VKGCSQEMVE MMDGENDLYT VSIIFWVFRT YGHNISSDIF 180
  181 NRFKGHNGKF KECLATDAKG ILSLYEAAHM GTTTDYILDE ALSFTLSYLE SLAANGTCKP 240
  241 NLVRRIRNAL GLLQNKNVEI LVAKEYIRFY EQEEDCDKTI LEFSMLNLKF LQLHYLQELK 300
  301 LLTKWYKEQD FESKLPPYYR DRIVELHLAT LAYINPKYSR VRIILTMIYT IQIILDDTCD 360
  361 RYASLREVES LAATIERWDH NDHAMEGLPD YLKSVAKFIF HTFQEFEREV SSESGGSYSL 420
  421 KATIEDCKRM MRSNLQLAKW AVTGHLPSFD EYLDVAGVEI AVYFTVAGIL LGMENINKKE 480
  481 AYEWLIFRDK LVRAMSTKAR LVNDLFGYKD DMRRGYVTNS INCYKKQYGV TEEEAFRKLH 540
  541 QMVADGDKMM NEEFLKPINV PHQVLKAVLD TLRAINICYD NEDGFTRLNG NLKNYITSMY 600
  601 VDL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle