| Protein: | TRP4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 640 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRP4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
720.0 | [0..1] | [640..1] |
|
|
637.0 | [0..1] | [636..1] |
|
|
629.0 | [0..1] | [636..1] |
|
|
625.0 | [0..1] | [625..1] |
|
|
621.0 | [0..1] | [625..1] |
|
|
593.0 | [0..1] | [627..1] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE 60
61 SSSTSTYASE ADNLDHLGGL IKQELEDGYT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.356 | a.105.1 | FIS-like |
| View | Download | 0.356 | a.4.1 | Homeodomain-like |
| View | Download | 0.330 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.327 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.321 | a.4.1 | Homeodomain-like |
| View | Download | 0.316 | a.4.1 | Homeodomain-like |
| View | Download | 0.306 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.286 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [91-320] |
1 11 21 31 41 51
| | | | | |
1 TKPCKSEFFD PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI 60
61 TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ VPNDSFKGYR 120
121 NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL 180
181 KALYRKRKLC YGYNPWKRET IHRKRRLSDK GLVVNYDGGL SSESVSNSPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [321-422] |
1 11 21 31 41 51
| | | | | |
1 KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL 60
61 GGGIRIGVLV QGKKVRDDNN TLSQTGLSCR ENLGNLGFTL EP
|
| Detection Method: | |
| Confidence: | 1.12 |
| Match: | 1v5oA |
| Description: | Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [423-530] |
1 11 21 31 41 51
| | | | | |
1 GLETLPVPLC SETPVLSLPT DSTKLSERSA ASPALETGIP LPPQDEDYLI NLGNSVENND 60
61 ELVPHLSDIP ADEQPSSDSR ALVPVLALES DALALVPVNE KPKRTELS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [531-640] |
1 11 21 31 41 51
| | | | | |
1 QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI 60
61 SPQQRRGEPV PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 2ajeA |
| Description: | No description for 2ajeA was found. |
