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View Structure Prediction Details

Protein: gi|18399721, gi|...
Organism: Arabidopsis thaliana
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399721, gi|....

Description E-value Query
Range
Subject
Range
gi|21536975 - gi|21536975|gb|AAM61316.1| unknown [Arabidopsis thaliana]
472.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTEAISLT KRGMLPPSSC NSLMDRSESL KRDSVMGNGA AKVRGSLERK KSKSFKEGDS  60
   61 YSSWLITEAP GSIAAVRREQ VAAQQALRKL KIAHYGRSKS TINFTSSKVV PLLNPNPNPH 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [121-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQRCSFLTPT SDPIYVAYHD EEWGVPVHDD KTLFELLTLS GAQVGSDWTS TLRKRHDYRK  60
   61 AFMEFEAEVV AKLTEKEMNA ISIEYKIEMS KVRGVVENAK KIVEIKKAFV SLEKYLWGFV 120
  121 NHKPISTNYK LGHKIPVKTS KSESISKDMV RRGFRFVGPT VVHSFMQAAG LTNDHLITCC 180
  181 RHAPCTLLAT NP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.69897
Match: 2ofiA
Description: No description for 2ofiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle