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View Structure Prediction Details

Protein: MBD10_ARATH
Organism: Arabidopsis thaliana
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD10_ARATH.

Description E-value Query
Range
Subject
Range
gi|62360137, gi|... - gi|70801193|gb|AAZ11101.1| hypothetical protein, conserved [Trypanosoma brucei], gi|62360137|gb|AAX8...
gi|71753647, gi|... - gi|72388472|ref|XP_844660.1| hypothetical protein [Trypanosoma brucei TREU927], gi|71753647|ref|XP_8...
170.0 [0..3] [382..520]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTDELVSI ELPAPASWKK LFYPKRAGTP RKTEIVFVAP TGEEISSRKQ LEQYLKAHPG  60
   61 NPVISEFEWT TGETPRRSSR ISQKVKATTP TPDKEPLLKK RRSSLTKKDN KEAAEKNEEA 120
  121 AVKENMDVDK DGKTENAEAE KEKEKEGVTE IAEAEKENNE GEKTEAEKVN KEGEKTEAGK 180
  181 EGQTEIAEAE KEKEGEKAEA ENKEAEVVRD KKESMEVDTS ELEKKAGSGE GAEEPSKVEG 240
  241 LKDTEMKEAQ EVVTEADVEK KPAEEKTENK GSVTTEANGE QNVTLGEPNL DADAEADKGK 300
  301 ESKEYDEKTT EAEANKENDT QESDEKKTEA AANKENETQE SDVKKTEAAV AEEKSNDMKA 360
  361 EDTNRSLEAN QVQQQQGAAA SVSC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle