YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|55740599, gi|...
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55740599, gi|....

Description E-value Query
Range
Subject
Range
gi|51854825 - gi|51854825|gb|AAR99350.2| hypothetical protein At2g36340 [Arabidopsis thaliana]
160.0 [0..1] [414..1]

Back

Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGTKRVADS IDTNSDDTLT RNREVEVEAM LSRRKQLRTT TTRTTTTRTT PLSLSSSASK  60
   61 MNWSKNDELV ILGGIVDYEN ETKLSYRSDW DALYRYIKDC VEAKFSKIQL INKVKNMKRK 120
  121 FTYNQGRSNH GEQLSFTNTD DDEIFKLSLI I

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 49.443697
Match: PF04504.5
Description: No description for PF04504.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [152-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDKNESEYVS NENIDQAKDV PSGEPETNDV PCEEQDDRDV PCEEQERANI EIDNGVREKL  60
   61 DQAKDVPCVE QESEDVPCVE QERVSIEIDN GEKEKLDQTM DCEEQENTDV LCEEKGDKDV 120
  121 PCEEQENKDV PCEEQERVSI EIDNGEEEMS SEEDGVDEVG V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [313-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDTLDSGIS FQGLGKNGVK DKSEEDDVVE LGVLQEIFKE DTFFQSLGRY QQKLLLQNLE  60
   61 NVGVERRKEL INEWKALFVD EQRLCVKKLT FAAKLANLGV SP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle