YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RER5_ARATH
Organism: Arabidopsis thaliana
Length: 735 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RER5_ARATH.

Description E-value Query
Range
Subject
Range
gi|110741982 - gi|110741982|dbj|BAE98930.1| hypothetical protein [Arabidopsis thaliana]
947.0 [0..1] [735..1]

Back

Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS  60
   61 SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV ALPPVATAPP PPPVEKEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-401]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AITSRIYDAS VLGEPMAVGK DKKRVWEKLL NARIVYLGEA EQVPTRDDKV LELEIVRNLR  60
   61 KRCIESDRQL SLALEAFPLD LQEQLNQYMD KRMDGEVLKS YVSHWPVQRW QEYEPLLSYC 120
  121 RDNGVKLIAC GTPLKVLRTV QAEGIRGLSE SERKLYTPPA GSGFISGFTS FSRSSSLNMN 180
  181 PLTQIVPFGP SSYLSAQARV VEDHTMSQVI VQAVADGGGT GMLVVVTGAN HVEYGSRGTG 240
  241 LPARISRKIP KKSQLVVLLD PERQFLRKEG ESPVADFLWY SAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.30103
Match: 2g5gX
Description: No description for 2g5gX was found.

Predicted Domain #3
Region A:
Residues: [402-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPCSRNCFDR AEIARVMNAA GRRRDALPQD IQKGLDLGLV SPEILQNFFD LEQYPLISEL  60
   61 TQRFQGFRER LLADPKFLNR LAIEEAISIT TTLVAQYEKR KENFFEELDY V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [513-735]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITDSVRASVV DFFTVWLPAP TLSFISYADE TIGPNSIDAL RGLLGSIPDN AFQKSLGGQE  60
   61 WTLSLRIASV IIGGLKLAGV GVVSSFAAVG SSNALYAIRK FIKPELGVGE QAKRSPMLKT 120
  121 ALVYGGYLGT SSNIRYQIIA GLIEHRISDE LSSQPLLVNM ISFVVRVANS YFGTQQWIDL 180
  181 ARSTGLQTQK SVTTSNQIPE VASQSTVEYS TTEEASMDDL KNQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle