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View Structure Prediction Details

Protein: CKX1_ARATH
Organism: Arabidopsis thaliana
Length: 575 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|77652412, gi|... - gi|91978598|ref|YP_571257.1| D-lactate dehydrogenase (cytochrome) [Rhodopseudomonas palustris BisB5]...
345.0 [0..40] [570..2]

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Predicted Domain #1
Region A:
Residues: [1-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLTSSLRFH RQNNKTFLGI FMILVLSCIP GRTNLCSNHS VSTPKELPSS NPSDIRSSLV  60
   61 SLDLEGYISF DDVHNVAKDF GNRYQLPPLA ILHPRSVFDI SSMMKHIVHL GSTSNLTVAA 120
  121 RGHGHSLQGQ ALAHQGVVIK MESLRSPDIR IYKGKQPYVD VSGGEIWINI LRETLKYGLS 180
  181 PKSWTDYLHL TVGGTLSNAG ISGQAFKHGP QINNVYQLEI VTGKGEVVTC SEKRNSELFF 240
  241 SVLGGLGQFG IITRARISLE PAPHMVKWIR VLYSDFSAFS RDQEYLISKE KTFDYVEGFV 300
  301 IINRTDLLNN WRSSFSPNDS TQASRFKSDG KTLYCLEVVK YFNPEEASSM DQETGKLLSE 360
  361 LNYIPSTLFS SEVPYIEFLD RVHIAERKLR AKGLWEVPHP WLNLLIPKSS IYQFATEVFN 420
  421 NILTSNNNGP ILIYPVNQSK WKKHTSLITP NEDIFYLVAF LPSAVPNSSG KNDLEYLLKQ 480
  481 NQRVMNFCAA ANLNVKQYLP HYETQKEWKS HFGKRWETFA QRKQAYDPLA ILAPGQRIFQ 540
  541 KTTGKLSPIQ LAKSKATGSP QRYHYASILP KPRTV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 2exrA
Description: X-Ray Structure of Cytokinin Oxidase/Dehydrogenase (CKX) From Arabidopsis Thaliana AT5G21482
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle