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View Structure Prediction Details

Protein: CRK40_ARATH
Organism: Arabidopsis thaliana
Length: 654 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRK40_ARATH.

Description E-value Query
Range
Subject
Range
CRK39_ARATH - Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=3 SV=1
513.0 [0..1] [654..1]

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Predicted Domain #1
Region A:
Residues: [1-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKCSALMIF LSSSLLLVLQ TLHVVNAVKC FGNSFNGNSS TFAQNRQKLF PTLADKVIIN  60
   61 DGFYNASLGQ DPDKVYALVS CARGYDQDAC YNCVQSLTQN TLTDCRSRRD SFIWGGNDDV 120
  121 TCLVRSSNQS TFGSVQLKPP VVWPSPDTIE SSKNITLFKQ QWEEMVNRTL EAATKAEGSS 180
  181 VLKYYKAEKA GFTEFPDVYM LMQCTPDLSS RDCKQCLGDC VMYFRKDYMG RKGGMASLPS 240
  241 CYFRWDLYSF 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.957
Match: 1npeB
Description: Crystal structure of Nidogen/Laminin Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [251-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNAFDNVTRV PAPPPRPHAQ EKESCITVKK GKSIGYGGII AIVVVFTFIN LLVFIGFIKV  60
   61 YARRGKLNNV GSAEYSDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [329-654]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGQFMLRFDL GMIVMATDDF SSENTLGQGG FGTVYKGTFP NGQEVAVKRL TKGSGQGDME  60
   61 FKNEVSLLTR LQHKNLVKLL GFCNEGDEEI LVYEFVPNSS LDHFIFDEDK RSLLTWEVRF 120
  121 RIIEGIARGL LYLHEDSQLK IIHRDLKASN ILLDAEMNPK VADFGTARLF DSDETRAETK 180
  181 RIAGTRGYMA PEYLNHGQIS AKSDVYSFGV MLLEMISGER NNSFEGEGLA AFAWKRWVEG 240
  241 KPEIIIDPFL IENPRNEIIK LIQIGLLCVQ ENSTKRPTMS SVIIWLGSET IIIPLPKAPA 300
  301 FTWIRSQSES GAMSLSDDVF TELSCR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.221849
Match: 2qkwB
Description: No description for 2qkwB was found.

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Created and Maintained by: Michael Riffle