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View Structure Prediction Details

Protein: gi|9757727, gi|1...
Organism: Arabidopsis thaliana
Length: 1060 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9757727, gi|1....

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
412.0 [0..49] [1057..1878]

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Predicted Domain #1
Region A:
Residues: [1-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFFGRGGK DSPADSASPS PRSYPSTSPA SSSAVTGPPR PIRLVYCDEK GKFRMDPEAV  60
   61 ATLQLVKEPI GVVSVCGRAR QGKSFILNQL LGRSNGFQVA STHKPCTKGL WLWSSPIKRT 120
  121 ALDGTEYNLL LLDSEGIDAY DQTMGGIDEA SLDRLSLVTQ MTKHIRVKAS GGTSSRSELG 180
  181 QFSPIFVWLL RDFYLDLVED NRKISPRDYL EIALRPVQGS GGDIGAKNEI RDSIRALFPD 240
  241 RECFTLVRPL NNEKDLQRLD QISLEKLRPE FGAGLDAFTK FVFEKTRPKQ LGGTVMTGPI 300
  301 LVGITQSYLD ALNNGAVPTI TSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 2b8wA
Description: Crystal-structure of the N-terminal Large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GMP/AlF4
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [324-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WQSVEETECR RAYDSGVEAY MAAFDQSKAP EEGALREEHE EAVRKALAIF NSNAVGNGSA  60
   61 RKKFEDLLHK DLKKKFEDYK KNAFMEADLR CTSTIQRMEK QLRAACHASN ANMDNVVKVL 120
  121 EARLAEYEAS CHGPGKWQKL SVFLQQSLEG PIYDLTKRLI DSIAIEKNSL AMKFRSVEDA 180
  181 MKHLKQQLDD SERYKLEYQK RYDESNNDKK KLEDIYRERI TKLQGENSSL NERCSTLVKT 240
  241 VESKKEEIKE WIRNYDQIVL KQKAVQEQLS SEMEVLRTRS TTSEARVAAA REQAKSAAEE 300
  301 TKEWKRKYDY AVGEARSALQ KAA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.21
Match: 1yvlA
Description: Structure of Unphosphorylated STAT1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [647-757]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVQERSGKET QLREDALREE FSITLANKDE EITEKATKLE KAEQSLTVLR SDLKVAESKL  60
   61 ESFEVELASL RLTLSEMTDK LDSANKKALA YEKEANKLEQ EKIRMEQKYR S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 2iw5A
Description: No description for 2iw5A was found.

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [758-1060]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFQRFDEVKE RCKAAEIEAK RATELADKAR TDAVTSQKEK SESQRLAMER LAQIERAERQ  60
   61 VENLERQKTD LEDELDRLRV SEMEAVSKVT ILEARVEERE KEIGSLIKET NAQRAHNVKS 120
  121 LEKLLDEERK AHIAANRRAE ALSLELQAAQ AHVDNLQQEL AQARLKETAL DNKIRAASSS 180
  181 HGKRSRFEDV VDMDIGEGSD RILRTNKRAR STRGDDHGPT DEGDEDFQSH QDNGEEEEEE 240
  241 DYRKLTVQNL KHELTKYDCG HLLLNRGHQN KKEILALYEA HVLPKKALAR EEERKKQREV 300
  301 TSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.39794
Match: 1c1gA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle