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View Structure Prediction Details

Protein: PRFB1_ARATH
Organism: Arabidopsis thaliana
Length: 456 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRFB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|83652657, gi|... - gi|83718832|ref|YP_442414.1| peptide chain release factor 2, programmed [Burkholderia thailandensis ...
468.0 [0..29] [444..51]

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Predicted Domain #1
Region A:
Residues: [1-456]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA  60
   61 QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA SANLQQLEQE ITNLESKATD 120
  121 TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG 180
  181 IIKELNKSLD KFELTQLLSG PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY 240
  241 KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE 300
  301 VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ 360
  361 LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG QQIRNYVFHP YKLVKDVRTG 420
  421 HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.0
Match: 1ml5Z
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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