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View Structure Prediction Details

Protein: TDR_ARATH
Organism: Arabidopsis thaliana
Length: 1041 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDR_ARATH.

Description E-value Query
Range
Subject
Range
gi|50509308, gi|... - gi|50934027|ref|XP_476541.1| putative OsLRK1(receptor-type protein kinase) [Oryza sativa (japonica c...
637.0 [0..34] [1016..26]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKNISPSL VLHPLLLLLL PFFAFNSLAL KFSPQLLSLL SLKTSLSGPP SAFQDWKVPV  60
   61 NGQNDAVWCS WSGVVCDNVT AQVISLDLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.0
Match: 1ogqA
Description: Polygalacturonase inhibiting protein PGIP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [90-634]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRNLSGRIPI QIRYLSSLLY LNLSGNSLEG SFPTSIFDLT KLTTLDISRN SFDSSFPPGI  60
   61 SKLKFLKVFN AFSNNFEGLL PSDVSRLRFL EELNFGGSYF EGEIPAAYGG LQRLKFIHLA 120
  121 GNVLGGKLPP RLGLLTELQH MEIGYNHFNG NIPSEFALLS NLKYFDVSNC SLSGSLPQEL 180
  181 GNLSNLETLF LFQNGFTGEI PESYSNLKSL KLLDFSSNQL SGSIPSGFST LKNLTWLSLI 240
  241 SNNLSGEVPE GIGELPELTT LFLWNNNFTG VLPHKLGSNG KLETMDVSNN SFTGTIPSSL 300
  301 CHGNKLYKLI LFSNMFEGEL PKSLTRCESL WRFRSQNNRL NGTIPIGFGS LRNLTFVDLS 360
  361 NNRFTDQIPA DFATAPVLQY LNLSTNFFHR KLPENIWKAP NLQIFSASFS NLIGEIPNYV 420
  421 GCKSFYRIEL QGNSLNGTIP WDIGHCEKLL CLNLSQNHLN GIIPWEISTL PSIADVDLSH 480
  481 NLLTGTIPSD FGSSKTITTF NVSYNQLIGP IPSGSFAHLN PSFFSSNEGL CGDLVGKPCN 540
  541 SDRFN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 2z7xB
Description: No description for 2z7xB was found.

Predicted Domain #3
Region A:
Residues: [635-706]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGNADIDGHH KEERPKKTAG AIVWILAAAI GVGFFVLVAA TRCFQKSYGN RVDGGGRNGG  60
   61 DIGPWKLTAF QR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [707-1041]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNFTADDVVE CLSKTDNILG MGSTGTVYKA EMPNGEIIAV KKLWGKNKEN GKIRRRKSGV  60
   61 LAEVDVLGNV RHRNIVRLLG CCTNRDCTML LYEYMPNGSL DDLLHGGDKT MTAAAEWTAL 120
  121 YQIAIGVAQG ICYLHHDCDP VIVHRDLKPS NILLDADFEA RVADFGVAKL IQTDESMSVV 180
  181 AGSYGYIAPE YAYTLQVDKK SDIYSYGVIL LEIITGKRSV EPEFGEGNSI VDWVRSKLKT 240
  241 KEDVEEVLDK SMGRSCSLIR EEMKQMLRIA LLCTSRSPTD RPPMRDVLLI LQEAKPKRKT 300
  301 VGDNVIVVGD VNDVNFEDVC SVDVGHDVKC QRIGV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.09691
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle