YRC Public Data Repository - Protein Structure Prediction

Protein:	TRXB3_ARATH
Organism:	Arabidopsis thaliana
Length:	529 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRXB3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|23308231, gi\|... - gi\|23308231\|gb\|AAN18085.1\| At2g41680/T32G6.20 [Arabidopsis thaliana], gi\|15912233\|gb\|AAL08250.1\| At2...	366.0	[0..1]	[529..1]
gi\|75910833, gi\|... - gi\|75910833\|ref\|YP_325129.1\| thioredoxin reductase [Anabaena variabilis ATCC 29413], gi\|75704558\|gb\|...	329.0	[0..78]	[528..1]
gi\|115473833, gi... - gi\|34576294\|emb\|CAE46765.1\| NADPH thioredoxin reductase [Oryza sativa (japonica cultivar-group)], gi...	329.0	[0..60]	[529..21]
gi\|17130082, gi\|... - gi\|17228232\|ref\|NP_484780.1\| thioredoxin reductase [Nostoc sp. PCC 7120], gi\|17130082\|dbj\|BAB72694.1... gi\|25285003 - pir\|\|AG1898 thioredoxin reductase [imported] - Nostoc sp. (strain PCC 7120)	324.0	[0..78]	[528..28]
gi\|22295650, gi\|... - gi\|22299467\|ref\|NP_682714.1\| thioredoxin reductase [Thermosynechococcus elongatus BP-1], gi\|22295650...	323.0	[0..78]	[528..1]
gi\|86558772, gi\|... - gi\|86610230\|ref\|YP_478992.1\| thioredoxin-disulfide reductase [Synechococcus sp. JA-2-3B'a(2-13)], gi... gi\|86610230 - gi\|86610230\|ref\|YP_478992.1\| thioredoxin-disulfide reductase [Cyanobacteria bacterium Yellowstone B-...	321.0	[0..85]	[528..9]
gi\|53687934 - gi\|53687934\|ref\|ZP_00109021.2\| COG0492: Thioredoxin reductase [Nostoc punctiforme PCC 73102]	320.0	[0..78]	[528..3]
TRXB_MYCLE - Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1 TRXB_MYCLE - Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae (strain TN) GN=trxB/A PE=3 SV... gi\|219934045, gi... - gi\|221230938\|ref\|YP_002504354.1\| bifunctional thioredoxin reductase/thioredoxin [Mycobacterium lepra...	310.0	[0..76]	[523..4]
gi\|86606033 - gi\|86606033\|ref\|YP_474796.1\| thioredoxin-disulfide reductase [Cyanobacteria bacterium Yellowstone A-... gi\|86606033, gi\|... - gi\|86606033\|ref\|YP_474796.1\| thioredoxin-disulfide reductase [Synechococcus sp. JA-3-3Ab], gi\|865545...	310.0	[0..85]	[528..9]
gi\|53762881, gi\|... - gi\|81299434\|ref\|YP_399642.1\| thioredoxin reductase [Synechococcus elongatus PCC 7942], gi\|81168315\|g...	306.0	[0..85]	[528..6]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPKIGIG IASVSSPHRV SAASSALSPP PHLFFLTTTT TTRHGGSYLL RQPTRTRSSD  60
   61 SLRLRV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SATANSPSSS SSGGEIIENV VIIGSGPAGY TAAIYAARAN LKPVVFEGYQ MGGVPGGQLM  60
   61 TTTEVENFPG FPDGITGPDL MEKMRKQAER WGAELYPEDV ESLSVTTAPF TVQTSERKVK 120
  121 CHSIIYATGA TARRLRLPRE EEFWSRGISA CAICDGASPL FKGQVLAVVG GGDTATEEAL 180
  181 YLTKYARHVH LLVRRDQLRA SKAMQDRVIN NPNITVHYNT ETVDVLSNTK GQMSGILLRR 240
  241 LDTGEETELE AKGLFYGIGH SPNSQLLEGQ VELDSSGYVL VREGTSNTSV EGVFAAGDVQ 300
  301 DHEWRQAVTA AGSGCIAALS AERYLTSNNL LVEFHQPQTE EAKKEFTQRD VQEKFDI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.30103
Match:	2a87A
Description:	Crystal Structure of M. tuberculosis Thioredoxin reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [424-529]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTKHKGQYA LRKLYHESPR VILVLYTSPT CGPCRTLKPI LNKVVDEYNH DVHFVEIDIE  60
   61 EDQEIAEAAG IMGTPCVQFF KNKEMLRTIS GVKMKKEYRE FIEANK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1oazA
Description:	IgE Fv SPE7 complexed with a recombinant thioredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits