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View Structure Prediction Details

Protein: gi|25370541, gi|...
Organism: Arabidopsis thaliana
Length: 264 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25370541, gi|....

Description E-value Query
Range
Subject
Range
gi|240254452, gi... - gi|4432796|gb|AAD20648.1| putative VSF-1-like b-ZIP transcription factor [Arabidopsis thaliana], pir...
107.0 [0..1] [262..1]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSDNITTP SGSRSMTQPS LASSSLPPLS PSSSTFRRNS LPSMSFSPSA PVESRDSSIK  60
   61 VNKNPSLPPL VDGEEDASWL EFGSSDYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [89-264]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDELNKIAKS TKLQDIAKST KLQEIVSDPK KVRRILKNRE LAASSKQRKL KYMIDLEHRI  60
   61 KFLENKNALI FEKIKLLEKD KTILMNEKKE ITIQIESLEQ QAQLRDALTE KLHVEIERLK 120
  121 VITISNEKGS VELQRLKMET CEVLQYRREF DRSNMQGMDP NMFTWSQPNL GFYGQI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle