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View Structure Prediction Details

Protein: PCAP1_ARATH
Organism: Arabidopsis thaliana
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCAP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|3980256 - gi|3980256|emb|CAA36409.1| filamentous hemagglutinin [Bordetella pertussis]
142.0 [0..14] [205..3262]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYWNSKVVP KFKKLFEKNS AKKAAAAEAT KTFDESKETI NKEIEEKKTE LQPKVVETYE  60
   61 ATSAEVKALV RDPKVAGLKK NSAAVQKYLE ELVKIEFPGS KAVSEASSSF GAGYVAGPVT 120
  121 FIFEKVSVFL PEEVKTKEIP VEEVKAEEPA K

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.53
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [152-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEEPAKTEGT SGEKEEIVEE TKKGETPETA VVEEKKPEVE EKKEEATPAP AVVETPVKEP  60
   61 ETTTTAPVAE PPKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle