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View Structure Prediction Details

Protein: gi|10177265, gi|...
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177265, gi|....

Description E-value Query
Range
Subject
Range
gi|15236182, gi|... - pir||T05066 hypothetical protein M3E9.190 - Arabidopsis thaliana, gi|7269490|emb|CAB79493.1| hypoth...
342.0 [0..32] [418..498]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTDDFEVE TISEIMVPFH HHPLSSYASE FLTSCSLCLF STFLGEIVTR IRYQCMDCGL  60
   61 KLHDECINSL SLNRPFLC

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.49
Match: 1r79A
Description: Solution Structure of The C1 Domain of The Human Diacylglycerol Kinase Delta
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [79-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NHILKVYTHI FTSSGRIYEN TCHFCQSKLE FLFARCTICN LNVDIECLFA LPPLTISEPK  60
   61 HHKHSLSLLL RLVTFTCNAC GVEGDRNPYV CLECNLMVHK DCVENLPRVI SIN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.30103
Match: 1xa6A
Description: Crystal Structure of the Human Beta2-Chimaerin
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [192-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RHDHRISHTF HLGKKEGDWE CGVCRKMINC VYGGYKCSRC PSYAVHSRCA TRKEVWDGLE  60
   61 LEDVPEEEEE IEDPFKVIND KGDIIHFSHE EHVLRLDE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [290-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYVIDDANMR CRCCILAING DPCYRCVECN FILHEACANL PRKKRHLLHN HKLTLSSTLI  60
   61 NKDIFHECGA CGIYTDGFIY ECRHEDCKKK IIKYDVRCSS VSEPFHHDLH QHPYTLPCKV 120
  121 RDDVRLVTKK 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.42
Match: 1v5nA
Description: Solution Structure of DC1 Domain of PDI-like Hypothetical Protein from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle