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View Structure Prediction Details

Protein: ALMT3_ARATH
Organism: Arabidopsis thaliana
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALMT3_ARATH.

Description E-value Query
Range
Subject
Range
gi|58743493 - gi|58743493|gb|AAW81734.1| Putative expressed protein [Brassica oleracea]
401.0 [0..1] [579..1]
ALMT9_ARATH - Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1
333.0 [0..27] [578..6]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPKLESFR RGSMFDGSFR RGSMFDGSFR QSMRDRLILQ SRGYSNVNDD DKTSVRCCSY  60
   61 SYFSDKITGV VKKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDVLVTAWEM GTADPRKMIF SAKMGLALTL TSILIFFKIP GLELSGHYLW AILTVVVIFE  60
   61 FSIGATFSKG CNRGLGTLSA GGLALGMSWI SEMTGNWADV FNAASIFVVA FFATYAKLYP 120
  121 TMKPYEYGFR VFLLTYCYVI VSGYKTGEFM ETAVSRFLLI ALGASVGLIV NTCI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 48.481486
Match: PF01027.11
Description: No description for PF01027.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [249-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPIWAGEDLH NLVAKNFVNV ATSLEGCVNG YLECVAYDTI PSRILVYEAV AEDPVYSGYR  60
   61 SAVQSTSQED TLMSFASWEP PHGPYKSFRY PWALYVKVGG ALRHCAIMVM ALHGCILSEI 120
  121 QAAEDRRREF RNELQRVGIE GAKVLRYIGE SLKKMEKLNP IEDILYEIHQ AAEELQSKID 180
  181 KKSYLLVNAK NWEIGNRPRV RDLTDEQKIS NLDSDLSRIL AHKSQSEATL RPPKNWDDVT 240
  241 TAANLSSATM LPYLQSRTMI HKQPSWPSRI SITPGSMLQP PLGEPGKMYE SASNLSLATF 300
  301 ASLLIEFVAR LENLVNAYDE LSVKANFKEA VSE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.06
Match: 2oevA
Description: No description for 2oevA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle