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View Structure Prediction Details

Protein: RH50_ARATH
Organism: Arabidopsis thaliana
Length: 781 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH50_ARATH.

Description E-value Query
Range
Subject
Range
gi|27311829 - gi|27311829|gb|AAO00880.1| putative DEAD/DEAH box helicase [Arabidopsis thaliana]
422.0 [0..1] [781..1]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG  60
   61 FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL TASFGRLKAQ KVKALVGKVT 120
  121 QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSGKSAERN EVKRASKVRE SRESRRDLDR LEGDDEDVDE VSNPDRFTDN QRAGSRSSYS  60
   61 KGGYAANSRG KGDRLSVARD LDSFEGHGRA IDEVSNPRKF NDNERAESRS SYSRDSSANS 120
  121 RGREDRRFVA KELDTFQGRD KAYDEVYNPR RFT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-781]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNERGLRGGS HSKGSDTNSR GWGDRRSVVY TRDMDDWRER NKTKDTRETG FFSRKTFAEI  60
   61 GCSEDMMKAL KEQNFDRPAH IQAMAFSPVI DGKSCIIADQ SGSGKTLAYL VPVIQRLREE 120
  121 ELQGHSKSSP GCPRVIVLVP TAELASQVLA NCRSISKSGV PFRSMVVTGG FRQRTQLENL 180
  181 EQGVDVLIAT PGRFTYLMNE GILGLSNLRC AILDEVDILF GDDEFEAALQ NLINSSPVTA 240
  241 QYLFVTATLP LEIYNKLVEV FPDCEVVMGP RVHRVSNALE EFLVDCSGDD NAEKTPETAF 300
  301 QNKKTALLQI MEENPVSKTI IFCNKIETCR KVENIFKRVD RKERQLHVLP FHAALSQESR 360
  361 LTNMQEFTSS QPEENSLFLV CTDRASRGID FSGVDHVVLF DFPRDPSEYV RRVGRTARGA 420
  421 RGKGKAFIFV VGKQVGLARR IIERNEKGHP VHDVPNAYEF TT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.522879
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle