YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CAMK4_ARATH
Organism: Arabidopsis thaliana
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAMK4_ARATH.

Description E-value Query
Range
Subject
Range
gi|16215467 - gi|16215467|emb|CAC82998.1| calcium-dependent protein kinase 2 [Nicotiana tabacum]
428.0 [0..20] [586..2]

Back

Predicted Domain #1
Region A:
Residues: [1-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHCYSRNIS AVEDDEIPTG NGEVSNQPSQ NHRHASIPQS PVASGTPEVN SYNISPFQSP  60
   61 LPAGVAPSPA RTPGRKFKWP FPPPSPAKPI MAALRRRRGA PPQPRDEPIP EDSEDVVDHG 120
  121 GDSGGGERLD K

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.38
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [132-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFGFGKNFEG KYELGKEVGR GHFGHTCWAK AKKGKMKNQT VAVKIISKAK MTSTLSIEDV  60
   61 RREVKLLKAL SGHRHMVKFY DVYEDADNVF VVMELCEGGE LLDRILARGG RYPEVDAKRI 120
  121 LVQILSATAF FHLQGVVHRD LKPENFLFTS RNEDAILKVI DFGLSDFIRY DQRLNDVVGS 180
  181 AYYVAPEVLH RSYSTEADMW SIGVISYILL CGSRPFYGRT ESAIFRCVLR ANPNFEDMPW 240
  241 PSISPTAKDF VKRLLNKDHR KRMTAAQALA HPWLRDENPG LLLDFSVYKL VKSYIR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.045757
Match: 2jc6A
Description: No description for 2jc6A was found.

Predicted Domain #3
Region A:
Residues: [428-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASPFRRSALK ALSKAIPDEE LVFLKAQFML LDPKDGGLSL NCFTMALTRY ATDAMMESRL  60
   61 PDILNTMQPL AQKKLDFEEF CAAAVSVYQL EALEEWEQIA TSAFEHFEHE GNRIISVQEL 120
  121 AGEMSVGPSA YPLLKDWIRS SDGKLSFLGY AKFLHGVTVR SSSSRPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle