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View Structure Prediction Details

Protein: gi|4587527, gi|1...
Organism: Arabidopsis thaliana
Length: 531 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4587527, gi|1....

Description E-value Query
Range
Subject
Range
gi|8778246 - gi|8778246|gb|AAF79255.1|AC023279_4 F12K21.9 [Arabidopsis thaliana]
351.0 [0..1] [531..1]

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Predicted Domain #1
Region A:
Residues: [1-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLTTQTLI ITIFLLTIPT SFASPPSLED VFAQCVTDFK PSNPKSPIQN YIYTQRSPNF  60
   61 LTILNNYVRN LRYFNNMTRK PVAIVAAADV THIQATITCA KKLGLQLRIR SGGHDYDGMS 120
  121 YLSTIDFVVL DMFNLRSINI DPKLDTAWVQ SGATLGEIYY GVANKSNDLR GFPAGICPGL 180
  181 GAGGHFSGGG YGNMMRKYGL SIDNIIDAKI VDAKGRVLDR SSMGEDLFWA LRGGGAASFC 240
  241 VVLAWKIKLV PVPAKVTVFN IETFGNTGSV NTTELVAKWQ EIADKIDNDL FIRLTLGSSN 300
  301 KTVKASFMGM YLGNSSNLLE IMNAKFPELG LIKRECIEMK WIESVLFWLG IPPGTAPTTS 360
  361 MLNRIPQKQI YLKRKSDYVQ KPISRTGLES IFKIMTENEN VTMAFNPYGG RMSEIPSTET 420
  421 AFPHRAGNMF KIQYAANWFV PGEAVAKDCL SQTERLFEAM SPYVSKNPRE AFLNYRDVDI 480
  481 GKSLNSTYEE GKVYGFKYFK DNFEKLVKIK SRVDPDNFFR YEQSIPVLSS H

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 2bvfA
Description: Crystal structure of 6-hydoxy-D-nicotine oxidase from Arthrobacter nicotinovorans. Crystal Form 3 (P21)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle